Analytical Genomics / Publications

Protein sequence-to-structure learning: Is this the end(-to-end revolution)?

Laine E., Eismann S., Elofsson A., Grudinin S. Proteins: Structure, Function, and Bioinformatics (2021)

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1 December 2021

Publications / Statistical Genomics and Biological Physics

adabmDCA: adaptive Boltzmann machine learning for biological sequences

Muntoni A., Pagnani A., Weigt M., Zamponi F. BMC Bioinformatics (2021)

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1 December 2021

Genetic Networks / Publications

Yap5 Competes With Hap4 for the Regulation of Iron Homeostasis Genes in the Human Pathogen

Delaveau T., Thiébaut A., Benchouaia M., Merhej J., Devaux F. Frontiers in Cellular and Infection Microbiology (2021)

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26 November 2021

Publications / Statistical Genomics and Biological Physics

Efficient generative modeling of protein sequences using simple autoregressive models

Trinquier J., Uguzzoni G., Pagnani A., Zamponi F., Weigt M. Nature Communications (2021)

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4 October 2021

Publications / Statistical Genomics and Biological Physics

Sparse generative modeling via parameter reduction of Boltzmann machines: Application to protein-sequence families

Barrat-Charlaix P., Muntoni A., Shimagaki K., Weigt M., Zamponi F. Physical Review E (2021)

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6 August 2021

Mathematical Modeling in Biology / Publications / Telomere & Genome Stability

Adaptation to DNA damage as a bet-hedging mechanism in a fluctuating environment

Roux P., Salort D., Xu Z. Royal Society Open Science (2021)

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1 August 2021

Analytical Genomics / Publications

Assessing conservation of alternative splicing with evolutionary splicing graphs.

Zea D., Laskina S., Baudin A., Richard H., Laine E. Genome Research (2021)

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1 August 2021