Analytical Genomics / Publications / Statistical Genomics and Biological Physics

Improvement in protein domain identification is reached by breaking consensus, with the agreement of many profiles and domain co-occurrence

Bernardes J., Zaverucha G., Vaquero C., Carbone A. PLOS Computational Biology (2016)

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29 July 2016

Publications / Statistical Genomics and Biological Physics

Diatom Phytochromes Reveal the Existence of Far-Red-Light-Based Sensing in the Ocean

Fortunato A., Jaubert M., Enomoto G., Bouly J., Raniello R., Thaler M., Malviya S., Bernardes J., Rappaport F., Gentili B., Huysman M., Carbone A., Bowler C., d’Alcalà M., Ikeuchi M., Falciatore A. The Plant Cell (2016)

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1 March 2016

Publications / Statistical Genomics and Biological Physics

Evaluation and improvements of clustering algorithms for detecting remote homologous protein families.

Bernardes J., Vieira F., Costa L., Zaverucha G. BMC Bioinformatics (2015)

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1 December 2015

Analytical Genomics / Publications / Statistical Genomics and Biological Physics

A multi-objective optimization approach accurately resolves protein domain architectures.

Bernardes J., Vieira F., Zaverucha G., Carbone A. Bioinformatics (2015)

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1 January 2015

Publications / Statistical Genomics and Biological Physics

A Review of Protein Function Prediction Under Machine Learning Perspective

Unknown Authors Recent Patents on Biotechnology (2013)

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31 July 2013

Analytical Genomics / Publications

A discriminative method for family-based protein remote homology detection that combines inductive logic programming and propositional models.

Bernardes J., Carbone A., Zaverucha G. BMC Bioinformatics (2011)

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1 December 2011

Publications / Statistical Genomics and Biological Physics

Structural descriptor database: a new tool for sequence-based functional site prediction.

Bernardes J., Fernandez J., Vasconcelos A. BMC Bioinformatics (2008)

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1 January 2008