Analytical Genomics / Publications

Codon bias is a major factor explaining phage evolution in translationally biased hosts.

Carbone A. Journal of Molecular Evolution (2008)

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1 March 2008

Genetic Networks / Publications

Role of Hog1 and Yaf9 in the transcriptional response of Saccharomyces cerevisiae to cesium chloride.

Del Vescovo V., Casagrande V., Bianchi M., Piccinni E., Frontali L., Militti C., Fardeau V., Devaux F., Sanza C., Presutti C., Negri R. Physiological Genomics (2008)

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1 March 2008

Analytical Genomics / Publications

Identification of Protein Interaction Partners and Protein–Protein Interaction Sites

Sacquin-Mora S., Carbone A., Lavery R. Journal of Molecular Biology (2008)

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1 January 2008

Analytical Genomics / Publications

Inconsistent distances in substitution matrices can be avoided by properly handling hydrophobic residues.

Baussand J., Carbone A. Evolutionary Bioinformatics (2008)

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1 January 2008

Analytical Genomics / Publications

Adaptation studied with the self-consistent codon index: genomic spaces, metabolic network comparison, minimal gene sets and viral classification

Unknown Authors Encyclopedia of Genetics, Genomics, Proteomics and Informatics (2008)

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1 January 2008

Genetic Networks / Publications

Responses of pathogenic and nonpathogenic yeast species to steroids reveal the functioning and evolution of multidrug resistance transcriptional networks.

Banerjee D., Lelandais G., Shukla S., Mukhopadhyay G., Jacq C., Devaux F., Prasad R. Eukaryotic Cell (2008)

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1 January 2008

Publications / Statistical Genomics and Biological Physics

Inference algorithms for gene networks: a statistical mechanics analysis

Braunstein A., Pagnani A., Weigt M., Zecchina R. Journal of Statistical Mechanics: Theory and Experiment (2008)

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1 January 2008