An empirical scoring function that estimates the binding affinity between two proteins, given the 3D structure of their complex.

INTerface Builder (INTBuilder): a fast and easy-to-use software to compute interfaces between two protein structures

CIPS is a new computational method for fast and accurate scoring of protein docking decoys.  

JET2 Viewer: a very large knowledge base containing JET2 predictions of protein binding sites for more than 40 000 chains, occurring in Protein Data Bank (PDB) structures.  

A large-scale method to predict protein-protein interfaces based on sequence and structure information.

COMmunication MApping: A method to dissect proteins dynamical architectures.